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Cloud is, thus far, the most out-of-character hero and story I've seen. In FFVII, he spent the majority of the game doing Sephiroth's bidding, without ever questioning why he was doing what he was doing. Sephiroth was omnipresent in VII, always leading Cloud onward. In Dissidia, Sephiroth is absent from much of Cloud's journey, and when he appears, he makes his usual speech about Cloud being his puppet. Yet, in Dissidia, Cloud is searching for a reason to go on fighting, which is a drastic shift from his original behaviour and motivation. In VII, there was only one point (maybe two) where Cloud wondered what he was fighting for, and it was a very small part of the game. Furthermore, he found something to fight for in the VII.
The end of FFVII marked the end of Cloud's story. Cloud's journey in VII was one of self discovery. Learning who he was, what his past was, why he originally embarked on his journey, and why he was more than just a Sephiroth clone. In Dissidia, however, he doesn't make that journey at all. He looks for one of his answers (and one that was very minor in FFVII), but never finds it. His journey gets no closure, no answer.
He doesn't even really fit in with his Compilation self. Because, in Advent Children, his question was never about why he fought, it was about whether he could or not. He doubted not his reasons, but his strength. The strength of his will to go on, and his body to fight the Geostigma. Compilation Cloud was all about finding the strength to overcome his trials, not finding the reason to undertake the trials at all, which is the focus of Dissidia Cloud.
And, yet, there is something fitting about Cloud's behaviour in Dissidia, because there is something crucial to Cloud that is missing from Dissidia, and that was his motivation. In FFVII, Cloud had two motivations that drove him beyond Sephiroth's manipulations: Tifa and Aeris. Each was a huge driving force in his life. Aeris's death gave a drive for revenge that continued on until the endgame with Sephiroth. And Tifa was the reason he left on his journey in the first place. Which played a more crucial role in motivating him is up for debate, as it depends on your actions in FFVII, and your interpretation of the events and your view on the love triangle. But it is obvious that both are huge motivators during Cloud's life.
In Dissidia, however, neither is there. Not just are they not in the game, but they aren't even hinted at (whereas Squall does hint that there is someone who promised to be waiting for him at one point, so even though Rinoa's not in-game, we can surmise that she's at least in the universe). So Cloud in Dissidia is the way he would be without them: drifting and empty, unsure of why he is on his journey.
Cloud's story in Dissidia is completely unfinished. Of all the stories I've seen in the game so far, his is the only one that completely lacks closure. Sephiroth does his standard "you'll never be rid of me" speech, and Cloud doesn't find his reason to keep going. Though he might have by Shade Impulse, as he mentions that if they win there, everything might go back the way it was before, or even better. He made that up, but he might want to believe it, and be fighting in the hopes that it would come true.