Ignore the rankings for a minute and look at what did make it on there (because no one will ever be happy with the rankings). From the way you made it sound in your first post, I'm surprised I saw anything pre-2000 on there, let alone a bunch of Miyazaki films.
And I will go on record as saying that the majority of Pixar's movies are better than anything Disney has done in years, and head and shoulders above many of their older classics. In fact, the only reason I can even stand watching some of the much older Disney movies is because I either grew up with them, or I cut them some slack for when they were made. Pixar pretty much are the modern Disney minus the music and fairy tales.