Off the top of my head:

Final Fantasy (NES and iPod versions)
Sonic The Hedgehog 1 & 2 (Genesis)
Sonic & Knuckles
Phantasy Star
Phantasy Star II
Phantasy Star IIIenerations of Doom
Mega Man 1, 2, 5, 6 and 7
Strider
Final Fight
Mega Man X
Mega Man X4
Sonic Heroes
Art of Fighting
Bionic Commando (NES)
Lifeforce/Salamander