So after leaving it alone all night last night and all day today, I came up with a Windows 7 repair disc and an HP specific repair disc and a Puppy Linux disc all to try and solve this trout.

My computer booted up fine.

I'm backing up everything to be safe, I don't understand how it had so many problems yesterday and runs fine right now. If it happens again I might just do a clean install since I'll have everything backed up.