Every Metal Gear Solid except for 1 and 3, definitely. I will say with MGS2 that I just watched a Let's Play of it and it kinda makes more sense now, partially because I've seen it a bunch of times and also because the world we now live in is much more like the one MGS2 was imagining.

Back in 2002 when the game said "Because of the internet the world is drowning in digital information and we need to control that," we couldn't really relate. We were still using geocities websites. But now it's 2016 and everything is online all the time, we all know about gaf and reddit and 4chan and we can all understand the concept that "wow, there's a lot of dumb trout on the internet huh?"

Another game I'd like to mention is FFXIII-2. That was just a mess towards the end. You have to way more competent than that to attempt anything involving time travel.