Best 2D RPG - Odin Sphere Leifthrasir, I need to talk more about this game sometime.
Best 3D RPG - Ys VIII: Lacrimosa of DANA, big surprise.
Best Isometric RPG - Ys: Oath in Felghana, an underrated gem.
Best Turn Based RPG - Trails of Cold Steel 2 albeit not for its combat, exactly.
Best ATB RPG - Chrono Trigger I mean it's ATB 2.0 what more do you want.
Best Action RPG - Ys VIII: Lacrimosa of DANA still.
Best MMORPG
Best Tactical RPG
Best RPG Score - Ys VIII: Lacrimosa of DANA again.
Best RPG Ending - Final Fantasy X, a few candidates there, but FFX's ending truly completes the story best.
Best RPG Opening - Final Fantasy X as well, actually.
Best Hero - Tidus truly embodies being a hero.
Best Heroine - Dana, beyond the shadow of a doubt.
Best Villain - Kefka, because he's the most pure 'villain', most great antagonistic forces I can think of can't be called villains per se, think Sin from FFX or Magus from Chrono Trigger.
Best Cast of Characters - Trails of Cold Steel, protags and antags alike.
Best Comic Relief character - Adelbert Steiner, best guy.
Best World/setting - Zemuria from Trails, as much as I love Spira it has nothing on the sheer scale of Zemuria.
Best Transportation (be specific) - Highwind (Final Fantasy VII), no other airship feels quite like it I have to admit.