A game I thought was extremely poor yet received undeserved accolades over the recent years was Golden Sun.

I also don't like Wind Waker, but this is a personal preference. I'm not going to argue that it is a bad game, but it is not to my liking. Same idea with Metroid Prime.

An entire series I've always disliked would be Resident Evil. I despise the controls, and the survival horror genre really doesn't do much for me either.