I'll avoid listing all the problems with VIII here, as that would be my entire list.

Deus Ex Human Revolution - Any one of the endings. Doesn't matter. They are all him saying what 'Might' have happened as a result, what he hoped happened. He is sure to make a point of you knowing he has no Idea if any of this actually happens.

FF VII - The game is pretty clear, and it is stated in the Ultimania guide, Sephiroth is in control the whole game. Sephiroth, whose plan just happen to be Identical to Jenova, is in control. Why are his plans Identical to that of Jenova if she has no control over him? This is utter nonsense.

Lufia series - WHO THE smurf IS AREK! I WANNA KNOW!