1. FFVI
2. FFIX
3. Lunar: SSSC
4. FFXII
5. Star Ocean II

(every one of the next 5 games have been in the top five at some point)
6. FFXI
7. Chrono Trigger
8. Vagrant Story
9. Final Fantasy Tactics
10. Kingdom Hearts I

11. Skyrim
12. FFVII
13. Chrono Cross
14. Legend of Dragoon
15. Secret of Mana 2

16. Final Fantasy I
17. Final Fantasy X
18. Bahamut Lagoon
19. Lost Odyssey
20. Torchlight

21. Super Mario RPG
22. Illusion of Gaia
23. Breath of Fire 2
24. Legend of Legaia
25. Dragon Age: Origins

Just missed the list: Grandia 2, Ultima 6